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ranger - A Fast Implementation of Random Forests

A fast implementation of Random Forests, particularly suited for high dimensional data. Ensembles of classification, regression, survival and probability prediction trees are supported. Data from genome-wide association studies can be analyzed efficiently. In addition to data frames, datasets of class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix') can be directly analyzed.

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cpp

16.41 score 809 stars 244 dependents 14k scripts 72k downloads

survivalsvm - Survival Support Vector Analysis

Performs support vectors analysis for data sets with survival outcome. Three approaches are available in the package: The regression approach takes censoring into account when formulating the inequality constraints of the support vector problem. In the ranking approach, the inequality constraints set the objective to maximize the concordance index for comparable pairs of observations. The hybrid approach combines the regression and ranking constraints in the same model.

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5.84 score 20 stars 2 dependents 95 scripts 1.2k downloads

fuseMLR - Fusing Machine Learning in R

Recent technological advances have enable the simultaneous collection of multi-omics data i.e., different types or modalities of molecular data, presenting challenges for integrative prediction modeling due to the heterogeneous, high-dimensional nature and possible missing modalities of some individuals. We introduce this package for late integrative prediction modeling, enabling modality-specific variable selection and prediction modeling, followed by the aggregation of the modality-specific predictions to train a final meta-model. This package facilitates conducting late integration predictive modeling in a systematic, structured, and reproducible way.

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5.32 score 7 stars 7 scripts 545 downloads